Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs2236149 | chr20:62506947 | C/T | 3.53E-13 | 407 | 15.25 | 15.8 | 5.4 | KM Plot |
| LGG | rs2236150 | chr20:62506968 | C/T | 3.53E-13 | 407 | 15.25 | 15.8 | 5.4 | KM Plot |
| LGG | rs2237096 | chr6:36008002 | C/T | 1.01E-9 | 406 | 15.57 | 15.17 | 6.15 | KM Plot |
| LGG | rs2240632 | chr14:74371166 | T/C | 1.9E-7 | 404 | 14.73 | 17.2 | 3.93 | KM Plot |
| LGG | rs2241847 | chr10:122617671 | A/T | 0.000128 | 401 | 16.33 | 14.43 | 16.3 | KM Plot |
| LGG | rs2253543 | chr10:7473809 | T/C | 2.65E-8 | 399 | 15.35 | 17.93 | 6.63 | KM Plot |
| LGG | rs2253553 | chr10:7474079 | G/A | 2.65E-8 | 399 | 15.35 | 17.93 | 6.63 | KM Plot |
| LGG | rs2253555 | chr10:7474162 | G/A | 2.65E-8 | 399 | 15.35 | 17.93 | 6.63 | KM Plot |
| LGG | rs2253564 | chr10:7474296 | G/A | 2.65E-8 | 399 | 15.35 | 17.93 | 6.63 | KM Plot |
| LGG | rs2253671 | chr10:7474733 | C/T | 2.46E-8 | 401 | 15.37 | 14.8 | 6.63 | KM Plot |
| LGG | rs2253674 | chr10:7474760 | A/G | 2.9E-7 | 407 | 4.18 | 16.47 | 15.32 | KM Plot |
| LGG | rs2253682 | chr10:7474929 | T/C | 2.46E-8 | 401 | 15.37 | 14.8 | 6.63 | KM Plot |
| LGG | rs2263132 | chr9:33806001 | A/G | 2.15E-5 | 403 | 15.55 | 15.67 | 6.13 | KM Plot |
| LGG | rs2271792 | chr17:75201529 | C/G | 0.000181 | 407 | 15.17 | 17.62 | 15.53 | KM Plot |
| LGG | rs2273919 | chr6:57006391 | C/T | 3.3E-6 | 405 | 15.33 | 15.3 | 7.8 | KM Plot |